Last updated: 2022-10-05

Checks: 7 0

Knit directory: false.alarm/docs/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20201020)

The command set.seed(20201020) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: b79f104

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version b79f104. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Renviron
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    .devcontainer/exts/
    Ignored:    .docker/
    Ignored:    .github/ISSUE_TEMPLATE/
    Ignored:    .httr-oauth
    Ignored:    R/RcppExports.R
    Ignored:    _regime_change/meta/process
    Ignored:    _regime_change/meta/progress
    Ignored:    _regime_change/objects/
    Ignored:    _regime_change/user/
    Ignored:    _regime_change2/meta/process
    Ignored:    _regime_change2/meta/progress
    Ignored:    _regime_change2/objects/
    Ignored:    _regime_change2/user/
    Ignored:    _regime_change3/meta/process
    Ignored:    _regime_change3/meta/progress
    Ignored:    _regime_change3/objects/
    Ignored:    _regime_change3/user/
    Ignored:    _regime_optimize/meta/meta2
    Ignored:    _regime_optimize/meta/process
    Ignored:    _regime_optimize/meta/progress
    Ignored:    _regime_optimize/objects/
    Ignored:    _regime_optimize/user/
    Ignored:    _targets/meta/process
    Ignored:    _targets/meta/progress
    Ignored:    _targets/objects/
    Ignored:    _targets/user/
    Ignored:    analysis/shiny/rsconnect/
    Ignored:    analysis/shiny_land/rsconnect/
    Ignored:    dev/
    Ignored:    inst/extdata/
    Ignored:    papers/aime2021/aime2021.md
    Ignored:    papers/epia2022/epia2022.md
    Ignored:    presentations/MEDCIDS21/MEDCIDS21-10min_files/
    Ignored:    presentations/MEDCIDS21/MEDCIDS21_files/
    Ignored:    presentations/Report/Midterm-Report_cache/
    Ignored:    presentations/Report/Midterm-Report_files/
    Ignored:    protocol/SecondReport_cache/
    Ignored:    protocol/SecondReport_files/
    Ignored:    protocol/_files/
    Ignored:    renv/python/
    Ignored:    renv/staging/
    Ignored:    src/RcppExports.cpp
    Ignored:    src/RcppExports.o
    Ignored:    src/contrast.o
    Ignored:    src/false.alarm.so
    Ignored:    src/fft.o
    Ignored:    src/mass.o
    Ignored:    src/math.o
    Ignored:    src/mpx.o
    Ignored:    src/scrimp.o
    Ignored:    src/stamp.o
    Ignored:    src/stomp.o
    Ignored:    src/windowfunc.o
    Ignored:    thesis/Rplots.pdf
    Ignored:    thesis/_bookdown_files/
    Ignored:    tmp/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html dbbd1d6 Francisco Bischoff 2022-08-22 Squashed commit of the following:
html de21180 Francisco Bischoff 2022-08-21 Squashed commit of the following:
html 5943a09 Francisco Bischoff 2022-07-21 Build site.
html 3328477 Francisco Bischoff 2022-07-21 Build site.
html 5927668 Francisco Bischoff 2022-04-17 Build site.
html 96dd528 Francisco Bischoff 2022-03-15 Build site.
Rmd c155156 Francisco Bischoff 2022-03-14 workflowr asd
Rmd 5f35362 Francisco Bischoff 2022-03-14 rekniting
html 0aefdd1 Francisco Bischoff 2022-03-14 workflowr 2
html 5f35362 Francisco Bischoff 2022-03-14 rekniting
html 4884ec1 Francisco Bischoff 2022-02-02 work
html ca1941e GitHub Actions 2021-10-12 Build site.
Rmd 6b03f43 Francisco Bischoff 2021-10-11 Squashed commit of the following:
html c19ec01 Francisco Bischoff 2021-08-17 Build site.
html a5ec160 Francisco Bischoff 2021-08-17 Build site.
html e7e5d48 GitHub Actions 2021-07-15 Build site.
Rmd 1473a05 Francisco Bischoff 2021-07-15 report
html 1473a05 Francisco Bischoff 2021-07-15 report
html 52e7f0b GitHub Actions 2021-03-24 Build site.
Rmd 7c3cc31 Francisco Bischoff 2021-03-23 Targets
html 7c3cc31 Francisco Bischoff 2021-03-23 Targets

Creative Commons License

This work is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/.


─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.2.1 (2022-06-23)
 os       Ubuntu 20.04.5 LTS
 system   x86_64, linux-gnu
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Europe/Lisbon
 date     2022-10-05
 pandoc   2.17.0.1 @ /usr/bin/ (via rmarkdown)

─ Packages ───────────────────────────────────────────────────────────────────
 package     * version     date (UTC) lib source
 askpass       1.1         2019-01-13 [1] CRAN (R 4.2.0)
 assertthat    0.2.1       2019-03-21 [1] CRAN (R 4.2.0)
 backports     1.4.1       2021-12-13 [1] CRAN (R 4.2.0)
 base64url     1.4         2018-05-14 [1] CRAN (R 4.2.0)
 bookdown      0.29.2      2022-09-26 [1] Github (rstudio/bookdown@dfe92a2)
 bslib         0.4.0       2022-07-16 [1] CRAN (R 4.2.1)
 cachem        1.0.6       2021-08-19 [1] CRAN (R 4.2.0)
 callr         3.7.2       2022-08-22 [1] CRAN (R 4.2.1)
 cli           3.4.1       2022-09-23 [1] CRAN (R 4.2.1)
 codetools     0.2-18      2020-11-04 [2] CRAN (R 4.2.0)
 crayon        1.5.1       2022-03-26 [1] CRAN (R 4.2.0)
 credentials   1.3.2       2021-11-29 [1] CRAN (R 4.2.0)
 data.table    1.14.2      2021-09-27 [1] CRAN (R 4.2.0)
 DBI           1.1.3       2022-06-18 [1] CRAN (R 4.2.0)
 debugme       1.1.0       2017-10-22 [1] CRAN (R 4.2.0)
 devtools      2.4.4       2022-07-20 [1] CRAN (R 4.2.1)
 digest        0.6.29      2021-12-01 [1] CRAN (R 4.2.0)
 dplyr         1.0.10      2022-09-01 [1] CRAN (R 4.2.1)
 ellipsis      0.3.2       2021-04-29 [1] CRAN (R 4.2.0)
 evaluate      0.16        2022-08-09 [1] CRAN (R 4.2.1)
 fansi         1.0.3       2022-03-24 [1] CRAN (R 4.2.0)
 fastmap       1.1.0       2021-01-25 [1] CRAN (R 4.2.0)
 fs            1.5.2       2021-12-08 [1] CRAN (R 4.2.0)
 generics      0.1.3       2022-07-05 [1] CRAN (R 4.2.0)
 gert          1.9.0       2022-09-15 [1] CRAN (R 4.2.1)
 getPass       0.2-2       2017-07-21 [1] CRAN (R 4.2.0)
 git2r         0.30.1.9000 2022-04-29 [1] Github (ropensci/git2r@80ba185)
 gittargets  * 0.0.5.9000  2022-09-26 [1] Github (wlandau/gittargets@a50dd58)
 glue          1.6.2       2022-02-24 [1] CRAN (R 4.2.0)
 here        * 1.0.1       2020-12-13 [1] CRAN (R 4.2.0)
 htmltools     0.5.3       2022-07-18 [1] CRAN (R 4.2.1)
 htmlwidgets   1.5.4       2021-09-08 [1] CRAN (R 4.2.0)
 httpuv        1.6.6       2022-09-08 [1] CRAN (R 4.2.1)
 httr          1.4.4       2022-08-17 [1] CRAN (R 4.2.1)
 igraph        1.3.5       2022-09-22 [1] CRAN (R 4.2.1)
 jquerylib     0.1.4       2021-04-26 [1] CRAN (R 4.2.0)
 jsonlite      1.8.0       2022-02-22 [1] CRAN (R 4.2.0)
 knitr         1.40        2022-08-24 [1] CRAN (R 4.2.1)
 later         1.3.0       2021-08-18 [1] CRAN (R 4.2.0)
 lifecycle     1.0.2       2022-09-09 [1] CRAN (R 4.2.1)
 magrittr      2.0.3       2022-03-30 [1] CRAN (R 4.2.0)
 memoise       2.0.1       2021-11-26 [1] CRAN (R 4.2.0)
 mime          0.12        2021-09-28 [1] CRAN (R 4.2.0)
 miniUI        0.1.1.1     2018-05-18 [1] CRAN (R 4.2.0)
 openssl       2.0.3       2022-09-14 [1] CRAN (R 4.2.1)
 pillar        1.8.1       2022-08-19 [1] CRAN (R 4.2.1)
 pkgbuild      1.3.1       2021-12-20 [1] CRAN (R 4.2.0)
 pkgconfig     2.0.3       2019-09-22 [1] CRAN (R 4.2.0)
 pkgload       1.3.0       2022-06-27 [1] CRAN (R 4.2.0)
 prettyunits   1.1.1       2020-01-24 [1] CRAN (R 4.2.0)
 processx      3.7.0       2022-07-07 [1] CRAN (R 4.2.1)
 profvis       0.3.7       2020-11-02 [1] CRAN (R 4.2.1)
 promises      1.2.0.1     2021-02-11 [1] CRAN (R 4.2.0)
 ps            1.7.1       2022-06-18 [1] CRAN (R 4.2.0)
 purrr         0.3.4       2020-04-17 [1] CRAN (R 4.2.0)
 R6            2.5.1       2021-08-19 [1] CRAN (R 4.2.0)
 Rcpp          1.0.9       2022-07-08 [1] CRAN (R 4.2.1)
 remotes       2.4.2       2021-11-30 [1] CRAN (R 4.2.0)
 renv          0.15.5      2022-05-26 [1] CRAN (R 4.2.0)
 rlang         1.0.6       2022-09-24 [1] CRAN (R 4.2.1)
 rmarkdown     2.16.1      2022-09-26 [1] Github (rstudio/rmarkdown@9577707)
 rprojroot     2.0.3       2022-04-02 [1] CRAN (R 4.2.0)
 rstudioapi    0.14        2022-08-22 [1] CRAN (R 4.2.1)
 sass          0.4.2       2022-07-16 [1] CRAN (R 4.2.1)
 sessioninfo   1.2.2       2021-12-06 [1] CRAN (R 4.2.0)
 shiny         1.7.2       2022-07-19 [1] CRAN (R 4.2.1)
 stringi       1.7.8       2022-07-11 [1] CRAN (R 4.2.1)
 stringr       1.4.1       2022-08-20 [1] CRAN (R 4.2.1)
 sys           3.4         2020-07-23 [1] CRAN (R 4.2.0)
 tarchetypes * 0.7.1       2022-09-07 [1] CRAN (R 4.2.1)
 targets     * 0.13.4      2022-09-15 [1] CRAN (R 4.2.1)
 tibble        3.1.8       2022-07-22 [1] CRAN (R 4.2.1)
 tidyselect    1.1.2       2022-02-21 [1] CRAN (R 4.2.0)
 urlchecker    1.0.1       2021-11-30 [1] CRAN (R 4.2.1)
 usethis       2.1.6.9000  2022-10-03 [1] Github (r-lib/usethis@8ecb7ab)
 utf8          1.2.2       2021-07-24 [1] CRAN (R 4.2.0)
 uuid          1.1-0       2022-04-19 [1] CRAN (R 4.2.0)
 vctrs         0.4.1       2022-04-13 [1] CRAN (R 4.2.0)
 whisker       0.4         2019-08-28 [1] CRAN (R 4.2.0)
 withr         2.5.0       2022-03-03 [1] CRAN (R 4.2.0)
 workflowr   * 1.7.0       2021-12-21 [1] CRAN (R 4.2.0)
 xfun          0.33        2022-09-12 [1] CRAN (R 4.2.1)
 xtable        1.8-4       2019-04-21 [1] CRAN (R 4.2.0)
 yaml          2.3.5       2022-02-21 [1] CRAN (R 4.2.0)

 [1] /workspace/.cache/R/renv/proj_libs/false.alarm-d6f1a0d1/R-4.2/x86_64-pc-linux-gnu
 [2] /usr/lib/R/library

──────────────────────────────────────────────────────────────────────────────